Medical Accelerated Analytics includes electronic health records, medical imaging, genomic data, and more. Meanwhile, medical imaging data occupies more than 90 percent among them. How to apply medical big data into clinical practice? This is a question that concerns medical and computational researchers, and deep learning and GPU computing provide an excellent answer for this question. We'll introduce our research of deep learning-based disease diagnosis such as Alzheimer's disease and mild cognitive impairment, and discuss current statuses and approaches of deep learning-based medical Accelerated Analytics.