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2017 GTC San Jose

S7367 - GPU-Accelerated Similarity Searching in a Database of Short DNA Sequences

Session Speakers
Session Description

The challenge: do interactive similarity searching in a SQL database that contains billions of short DNA sequences. The response: this database query is amenable to GPU acceleration because efficient numerical computation can be carried out in parallel on large numbers of independent data items. Implementation details and performance will be discussed, with emphasis on the integration of GPU computation with the database server environment.


Additional Session Information
Intermediate
Talk
Algorithms Computational Biology
Healthcare & Life Sciences Higher Education / Research
25 minutes
Session Schedule